Pipelines That
Run Themselves.
Built by PhDs.
Custom Nextflow & Snakemake pipelines. Docker containerization. Cloud & on-prem deployment. Monthly maintenance retainers. Written in Python, Rust, Bash, Perl — whatever your stack needs. From $5,000.
Stop Babysitting Fragile Scripts
Your lab has sequencing data flowing in. Your analysis pipeline is a tangle of bash scripts, hardcoded paths, and one person who knows how it works. We fix that.
✗ What You Have Now
✓ What We Deliver
Five Pipeline Services
From a single custom pipeline to full infrastructure overhaul with ongoing support.
Custom NGS Pipeline Development
$5K–$20KEnd-to-end bioinformatics pipeline built to your exact specifications. Written in Nextflow or Snakemake with Docker containers.
Containerization & Reproducibility
$2K–$8KWe containerize your pipeline — every tool, every dependency, every version pinned. Docker for cloud, Singularity for HPC.
Cloud Deployment & Optimization
$5K–$15KDeploy on AWS, GCP, or Azure with auto-scaling, spot instances for cost savings, and monitoring.
On-Prem Server Setup
$3K–$10KOptimize your Linux server or HPC cluster for bioinformatics workloads — install tools, configure schedulers, tune performance.
LIMS & System Integration
$5K–$15KConnect your bioinformatics pipeline to your LIMS, EHR, or data management system. Auto-trigger analysis when samples arrive, push results back to the database, generate alerts and reports.
Our Engineering Stack
Full SuiteLANGUAGES
WORKFLOW ENGINES
INFRASTRUCTURE
Monthly Maintenance Retainers
Your pipeline doesn't stop after deployment. Tools update, bugs surface, data formats change. A retainer keeps everything running — and gives you a bioinformatics engineer on call.
Starter
For labs with a stable pipeline needing occasional updates
Billed monthly · Cancel anytime
Growth
For active labs with evolving pipeline needs
Billed monthly · 10% off annual
Enterprise
For organizations with critical production pipelines
Annual contract · Custom SLA
Project Pricing Summary
| Service | Starting At | Typical Range | Timeline | Billing |
|---|---|---|---|---|
| Custom NGS Pipeline | $5,000 | $5K–$20K | 2-4 weeks | 50/50 milestone |
| Containerization | $2,000 | $2K–$8K | 1-2 weeks | Fixed price |
| Cloud Deployment | $5,000 | $5K–$15K | 2-4 weeks | 50/50 milestone |
| On-Prem Server Setup | $3,000 | $3K–$10K | 1-2 weeks | Fixed price |
| LIMS / System Integration | $5,000 | $5K–$15K | 2-4 weeks | Milestone-based |
| Maintenance Retainer | $2,000/mo | $2K–$8K/mo | Ongoing | Monthly |
| Full Infra Overhaul | $15,000 | $15K–$50K | 4-8 weeks | Milestone-based |
Pipeline Questions
Nextflow or Snakemake — which should I choose?
Do I own the code?
What does the retainer include month to month?
Can you migrate my existing bash scripts to a proper pipeline?
Can you build pipelines in Rust or Julia for performance?
Tell Us What
You're Building.
Free architecture consultation. We assess your current setup, recommend the right approach, and deliver a clear proposal within 48 hours.
Request Pipeline Consultation
Need Analysis Too?
We build pipelines AND run them. Explore our analysis services.
Ready to Automate Your Pipeline?
Let's discuss your workflow and build a production-grade pipeline that runs itself.
Get Free Consultation →
Genix.ai is an AI-powered clinical platform using NGS and imaging to detect biomarkers early, enabling clinicians to deliver cost-effective, personalized treatments for rare pediatric conditions, cancer care, and infectious diseases.
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Developed in Association with Chadura.